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Species belonging to selected taxon:

Pinus taeda



ABOUT THIS RECORD

ID: MNEST002053
species: Pinus taeda
miRNA family: MIR482
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTCCCTATTCCTCCCATT

miRNA*
TGGGAGGGTAGGAGAAGGCT

mismatches: 0
bulges: 2

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pre-miRNA
AAGTCTTGAGGAGTGGGAGGGTAGGAGAAGGCTCTGTGGTGAGGTCTCAGTCATAATCTCATCAGTCTTCCCTATTCCTCCCATTCCTATTGCCT

dot-bracket secondary structure
........(((((((((((((((((.((((((....(((((((((..........))))))))))))))))))).))))))))))))).......


SIMILARITIES
miRBase pta-MIR482c: 4e-40

PMRD pta-miR482c: 4e-40

microPC miR482: 0.00000007
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: pta-miR482c from PMRD (MNEST051569)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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